MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2538738412334193
cnr5.021967969709653
efc0.5713787310774954
fber99.83003234863281
fwhmavg3.667683333333333
fwhmx3.60272
fwhmy3.8528
fwhmz3.54753
icvscsf0.15945845176986767
icvsgm0.5116810152157788
icvswm0.3288605330143535
inumed1.1044912338256836
inurange0.34009801745414725
qi10.0
qi20.0006213054873516128
rpvecsf34.39913274107803
rpvegm12.938781017917453
rpvewm21.41644679622578
sizex180
sizey256
sizez256
snrcsf2.0856520425772396
snrgm10.678088370960129
snrtotal10.352172184574313
snrwm18.292776140185566
snrdcsf12.73418929952114
snrdgm29.8865217183013
snrdtotal30.800249639885383
snrdwm49.78003790183371
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.6631698193831022
summarybgmad13.160776138305664
summarybgmean50.68353271484375
summarybgmedian49.81511688232422
summarybgn2600496.0
summarybgp0530.59009885787964
summarybgp9574.0329532623291
summarybgstdv13.520787239074707
summarycsfk4.407007400418474
summarycsfmad132.6105499267578
summarycsfmean275.61431884765625
summarycsfmedian255.81210327148438
summarycsfn8045.0
summarycsfp05108.85134735107422
summarycsfp95478.52994384765617
summarycsfstdv122.64567565917969
summarygmk0.42172640851930643
summarygmmad53.31341552734375
summarygmmean602.5692138671875
summarygmmedian600.3785400390625
summarygmn50279.0
summarygmp05514.3632690429688
summarygmp95698.9183898925781
summarygmstdv56.22472381591797
summarywmk0.8852708836471943
summarywmmad48.142948150634766
summarywmmean994.5484008789062
summarywmmedian1000.0115356445312
summarywmn149419.0
summarywmp05892.7666015625
summarywmp951074.5420043945312
summarywmstdv54.66683578491211
tpmoverlapcsf0.21720130741596222
tpmoverlapgm0.5525786876678467
tpmoverlapwm0.5414729714393616
wm2max0.6161788136626166

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum599b971e84f110b9f849a05a879a322d
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.