MRIQC: individual T1w report

Summary

Subject ID: 020_ExercisePre.
Date and time: 2018-05-06, 20:50.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2538738412334193
cnr			5.021967969709653
efc			0.5713787310774954
fber			99.83003234863281
fwhm	avg		3.667683333333333
fwhm	x		3.60272
fwhm	y		3.8528
fwhm	z		3.54753
icvs	csf		0.15945845176986767
icvs	gm		0.5116810152157788
icvs	wm		0.3288605330143535
inu	med		1.1044912338256836
inu	range		0.34009801745414725
qi	1		0.0
qi	2		0.0006213054873516128
rpve	csf		34.39913274107803
rpve	gm		12.938781017917453
rpve	wm		21.41644679622578
size	x		180
size	y		256
size	z		256
snr	csf		2.0856520425772396
snr	gm		10.678088370960129
snr	total		10.352172184574313
snr	wm		18.292776140185566
snrd	csf		12.73418929952114
snrd	gm		29.8865217183013
snrd	total		30.800249639885383
snrd	wm		49.78003790183371
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.6631698193831022
summary	bg	mad	13.160776138305664
summary	bg	mean	50.68353271484375
summary	bg	median	49.81511688232422
summary	bg	n	2600496.0
summary	bg	p05	30.59009885787964
summary	bg	p95	74.0329532623291
summary	bg	stdv	13.520787239074707
summary	csf	k	4.407007400418474
summary	csf	mad	132.6105499267578
summary	csf	mean	275.61431884765625
summary	csf	median	255.81210327148438
summary	csf	n	8045.0
summary	csf	p05	108.85134735107422
summary	csf	p95	478.52994384765617
summary	csf	stdv	122.64567565917969
summary	gm	k	0.42172640851930643
summary	gm	mad	53.31341552734375
summary	gm	mean	602.5692138671875
summary	gm	median	600.3785400390625
summary	gm	n	50279.0
summary	gm	p05	514.3632690429688
summary	gm	p95	698.9183898925781
summary	gm	stdv	56.22472381591797
summary	wm	k	0.8852708836471943
summary	wm	mad	48.142948150634766
summary	wm	mean	994.5484008789062
summary	wm	median	1000.0115356445312
summary	wm	n	149419.0
summary	wm	p05	892.7666015625
summary	wm	p95	1074.5420043945312
summary	wm	stdv	54.66683578491211
tpm	overlap	csf	0.21720130741596222
tpm	overlap	gm	0.5525786876678467
tpm	overlap	wm	0.5414729714393616
wm2max			0.6161788136626166

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	599b971e84f110b9f849a05a879a322d
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.